@TailDragger Hi there! Thank you very much! 
The command changes are noted in the change-log. there may be more in the future as well, but they will always be noted in the change-log. The search light commands were combined into one on/off toggle command instead of two separate on/off commands. This was requested by several people and makes sense, since the switches are actually one switch, they should be for hardware as well. It’s just a matter of remapping them.
Thank you for the heads up on the hide tablet not saving for next flight. That is something I didn’t notice and could be a typo in the code. I will get on that tomorrow so it’s fixed in this weeks update.
I’m not sure what the bug is with the translucent lines or numbers. It’s very random and linked to the default code for those couple devices. I will be checking this out tomorrow too. It’s hard to replicate but I will try my best to get that bug squashed, as rare as it is.
There is a good manual in PDF format that can be found in the “manuals” folder in the main directory of the package. There are full checklists in PDF format as well. The folder is “MANUALS” in all caps. This can also be accessed using the tablet if you navigate to manuals, then you can view them right in the sim.
As far as the advanced problem goes, I don’t fully understand or know your exact setup. Two instances of X-Plane I assume? The scripts are solid and wont change when running on one machine, or even 10. It sounds like the scripts aren’t running on one machine and thus the haywire everything. The same thing will happen if I accidentally bug a script. Everything goes haywire because most of the animations require the custom code. So anything not default X-Plane datarefs will not display correctly. The 222s are miles past default.
But… My brain tells me that one PC is running the aircraft, scripts and all, then the other is there to view what the master PC is dishing out. I can see this causing issues. How does this work with other aircraft?
For replays, X-Plane only saves so much data so panels and some animations will do funny things or not replay at all. Again I’m not familiar with your unique setup so my suggestions are limited here. My assumptions could be way off or I’m just not understanding how networking the sim works. I’ve never done it. I have networking experience but not with X-Plane. I will be studying networking X-Plane for this reason now. 
Thank for the compliments and heads up. The broken will be fixed. Have fun.
Josh